rs254585911 SNP Detail

Summary

• ID
  rs254585911
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:4879121 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGGATGTG AATTGGATAC
  CAGAGGAGTG GAATGTTTGC AAAGGCAGTG TGCAGTTTTG GAGCAGGTTG AGAAAGACCG
  GTTGATTCTG TTGAGAGAAA TAGCAATAAC ATGAAGCATA AGTCCCAGAT CAGAGTGCAG
  ATGATCCCTT AAAAGAGAAA AATCAAAGAA GGTGGGGCCA CAGCTCAAAG ATTAATTTGG
  W
  GGCTTATCAA ACCCATTTTG CTTTTGTGGT TCTGGAGAAG AAACTTGAGG TCAGTGTGTG
  CCGTGTGGAC ACTTCACCAG TCCCTGACCG GACTATGCAG CACTAACTTT AGCTTAGGAT
  TTTCTGTTAT TAATCCTTGG GTTGCCTTCT GTTTAATTGA GTGATTATCT GGCTGAAACT
  TGTGTTGTAT AAGATTGTCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss348472873	MGP_WTSI_1_4798979	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254585911					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss348472873	MGP_WTSI_1_4798979	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:4879121 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9	CpG island 9	604 bp distal
Gm37988	predicted gene, 37988	within coordinates
Gm70766	predicted gene, 70766	1168 bp upstream
Lypla1	lysophospholipase 1	within coordinates
Rr407434	regulatory region 407434	1179 bp distal
Rr407435	regulatory region 407435	977 bp distal
Rr407436	regulatory region 407436	782 bp distal
Rr407437	regulatory region 407437	1431 bp proximal
Tssr5801	transcription start site region 5801	1226 bp downstream
Tssr5802	transcription start site region 5802	970 bp downstream
Tssr5803	transcription start site region 5803	611 bp downstream
Tssr10888	transcription start site region 10888	1196 bp upstream
Tssr10889	transcription start site region 10889	1151 bp upstream