rs254587093 SNP Detail

Summary

• ID
  rs254587093
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:99242224 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCGCAGCTC AACAGAAGCT
  AACAGGCTTC TGAGGCTATG TGTCAGGGAC CCAGAGCTGT CTCCAGCAAG GCGAGGCAGA
  AGGAACACTT GGGATACACA GATCGAGATA TTACCTGTCA GGGCTCTGCT CCTCACCCGA
  GTAGAATGTT GTCCCTTCCC GCCACTGTGC AGCCCTGCAG GAACAGGTCC TGGTTAGACT
  R
  CCAAGCTCCC GGGGAGAGGT CATCCCTTTG TCTTTCGCGC TCACAGGCCC ACACCTCCTT
  ACCACCTGAC TCAATGTGTT TGCACAGAGT GTGGAAGATG CACACGTGAG GGAGAGTTGC
  AAAGACAGTG GCTGGCTGTG AGTGCAATGT TCAATGTCCA ACGTGAGACC CGTGACATCC
  TTTGGGACTT TATTGCCCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323135628	CHEV_9_99260590	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254587093					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:99242224 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22193	CpG island 22193	1466 bp distal
Esyt3	extended synaptotagmin-like protein 3	1614 bp upstream
Rr198328	regulatory region 198328	577 bp proximal
Rr206935	regulatory region 206935	1423 bp distal
Tssr91051	transcription start site region 91051	1619 bp upstream