rs254590434 SNP Detail

Summary

• ID
  rs254590434
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:98156020 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACACA GGAGACAGTG GATTCGACCA
  S
  GAGGCTTGGA AGCTAGGGGT TTTTA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss922983547	MGP_WTSI_15_98258139	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	G	G	G	G	C	G	G	G	G	G	G	C	C	G	C	C	C	G	C	C	G	G	C	C	C	G	C	G	C	C	G	G	G	C	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254590434					SNP	C	C	C	G	G	G	G	C	G	G	G	G	G	G	C	C	G	C	C	C	G	C	C	G	G	C	C	C	G	C	G	C	C	G	G	G	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss922983547	MGP_WTSI_15_98258139	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:98156020 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7649	CpG island 7649	956 bp distal
H1f7	H1.7 linker histone	846 bp upstream
Rr311340	regulatory region 311340	1256 bp distal
Rr391174	regulatory region 391174	within coordinates
Tssr136230	transcription start site region 136230	827 bp upstream
Tssr136231	transcription start site region 136231	707 bp upstream