rs254593239 SNP Detail

Summary

• ID
  rs254593239
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:61213936 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GACGC GGAGGGCGGG TCTCCCGGGG
  R
  GTGGGCGGGG CCTCCACACA TCACC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325886307	CHEV_19_61301401	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254593239					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:61213936 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11146	CpG island 11146			within coordinates
Csf2ra	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)			Coding-NonSynonymous
				Intron
				Noncoding-Transcript-Variant
Gm56644	predicted gene, 56644			within coordinates
Rr406075	regulatory region 406075			917 bp downstream
Rr406076	regulatory region 406076			434 bp upstream
Rr406077	regulatory region 406077			1728 bp upstream
Rr550838	regulatory region 550838			1306 bp distal
Rr550839	regulatory region 550839			1357 bp distal
Rr550840	regulatory region 550840			1340 bp proximal
Rr550841	regulatory region 550841			1868 bp proximal
Tssr157374	transcription start site region 157374			1058 bp downstream
Tssr157375	transcription start site region 157375			1015 bp downstream
Tssr157376	transcription start site region 157376			953 bp downstream
Tssr157377	transcription start site region 157377			888 bp downstream
Tssr157378	transcription start site region 157378			814 bp downstream
Tssr157379	transcription start site region 157379			736 bp downstream
Tssr157380	transcription start site region 157380			1994 bp upstream
Tssr160090	transcription start site region 160090			892 bp upstream
Tssr160091	transcription start site region 160091			868 bp upstream
Tssr160092	transcription start site region 160092			744 bp upstream
Tssr160093	transcription start site region 160093			649 bp upstream
Tssr160094	transcription start site region 160094			587 bp upstream
Tssr160095	transcription start site region 160095			500 bp upstream
Tssr160096	transcription start site region 160096			52 bp upstream
Tssr160097	transcription start site region 160097			101 bp downstream
Tssr160098	transcription start site region 160098			578 bp downstream
Tssr160099	transcription start site region 160099			786 bp downstream
Tssr160100	transcription start site region 160100			839 bp downstream
Tssr160101	transcription start site region 160101			1152 bp downstream
Tssr160102	transcription start site region 160102			1695 bp downstream
Tssr160103	transcription start site region 160103			1807 bp downstream