rs254594035 SNP Detail

Summary

• ID
  rs254594035
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:35699591 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTCAGTCT CTACGTAAGT
  CTATGAGAAA CAGACTGCAG CTCAGACACC ACTGTAAAGC CTGATCTAAT GAGCACTTGC
  AGCTGACTTA ATCCTATTGC AGGGCTGTAA GCAGCCATGG GACAAAATGG TTTCCACATT
  GACATCAGTG GAAAGAGCTT TAGATTTTAT CAGCAGAAAG AATATATACC TTGTACACAC
  R
  GTAGCCACTT TTAAAGAATT AGCATCATGA TCCTTTCTAA GCCAGGTTGT TCCTGATGCA
  AGCCCGGATT AAAAGTGCCC AGAATGTGTT GTTTTGTTTT CTTAAAACCT GAGTTCATTA
  AAAAATGAAA ACTTGTCAAA CTTAAAACTC TGAATATAAT ATAAAGAATG ACCAACTTAC
  TGTGATTCAT TATGCATGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CE/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi5/Ianm	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss393630147	MGP_WTSI_15_35629200	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CE/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi5/Ianm	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254594035					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss393630147	MGP_WTSI_15_35629200	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:35699591 () rs orientation: forward

Symbol	Name	Function Class
Rr647	regulatory region 647	1924 bp proximal
Rr309492	regulatory region 309492	1780 bp proximal
Vps13b	vacuolar protein sorting 13B	within coordinates