rs254595365 SNP Detail

Summary

• ID
  rs254595365
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:71229530 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCGCGGTTC CAAGCCTTCG
  GGCCCGCCCC CAGGCGGAAA TAGCCGAGCG CACTCGGGTC GGGAGGGCGG GCCTTTCCCC
  CCACACGAGG CGGAGCCCGA AGACCGAGGC ACGCGGGCAA GCCTCCGGAA GCTGCCGAGT
  GTGCTCCCGC GGGAATGGGA GGCTGGGCTT TGCCACGAGA CAGCCGAGGC TGGTCGGAGA
  Y
  AGCCGAGCAC GGCCGTCGGA GGCTCACGAA AACACTAGAA AGCGGAAGGG TCGGGAACGC
  ATTCGGTCCG AAGCTGGGCT CGGTGGACTT GGGACTCTGA GATACCCGAG CCATTCCGGA
  AGCAGCAGAA CGTGCCATAA CAGGGGTTTG TTTGTGTTTT TTACGAAGTC GTGAACCTGC
  CAGACCGCGG AATGTGTCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss375106120	MGP_WTSI_8_73300785	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs254595365					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375106120	MGP_WTSI_8_73300785	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:71229530 () rs orientation: forward

Symbol	Name	Function Class
2010320M18Rik	RIKEN cDNA 2010320M18 gene	within coordinates
Cpgi20500	CpG island 20500	within coordinates
Mast3	microtubule associated serine/threonine kinase 3	1231 bp downstream
Pik3r2	phosphoinositide-3-kinase regulatory subunit 2	174 bp upstream
Rr186787	regulatory region 186787	within coordinates
Rr368551	regulatory region 368551	221 bp upstream
Rr400915	regulatory region 400915	within coordinates
Tssr77827	transcription start site region 77827	113 bp downstream
Tssr77828	transcription start site region 77828	57 bp downstream
Tssr77829	transcription start site region 77829	within coordinates
Tssr77830	transcription start site region 77830	446 bp upstream
Tssr81673	transcription start site region 81673	246 bp upstream
Tssr81674	transcription start site region 81674	170 bp upstream
Tssr81675	transcription start site region 81675	155 bp upstream