rs254595875 SNP Detail

Summary

• ID
  rs254595875
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:52652561 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTAGACAA CACTGATAAA
  CATTGTTCTG GTATGTTCGT ATTTAACCCT TGGGTAGAGC ACGCTGGCGC GGAAAGCACA
  GAGTTGGCCA CCAGAGAAAG GGATGACAAA TGAAGAAAGG GGTGTTGATT CTGAGTCTCT
  GGATCATTGG ATTCCATAAC CAGGTGTTTC CCAAAGTTGG AGCTAACAAA TTACCTTCTT
  Y
  GGGCAAGATT GGAGGTGTTT GTTCCCTCAC TGGGCAATGG TTCTAGAGCC CTGCGGTGCT
  AGTTCTGAGC CCTGGTTTCT AGGGCTGTTG TCGCACAGAA TTTTGTAAAA TCCAGTGGAC
  ACACAGAAGC AGCCTCTCTT CCTCTCCTTC TGTTAGCATG AGATTTGTCT GGATATTTTC
  AATATGTTTC CGGTCAGTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss385993176	MGP_WTSI_12_53706765	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254595875					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss385993176	MGP_WTSI_12_53706765	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:52652561 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4596	CpG island 4596	1985 bp distal
Cpgi4597	CpG island 4597	743 bp distal
Gm23296	predicted gene, 23296	1187 bp upstream
Gm24859	predicted gene, 24859	1884 bp downstream
Gm35239	predicted gene, 35239	within coordinates
Gm59577	predicted gene, 59577	within coordinates
Rr369517	regulatory region 369517	795 bp downstream
Rr403283	regulatory region 403283	1824 bp downstream
Rr403284	regulatory region 403284	1061 bp downstream
Rr466027	regulatory region 466027	896 bp distal
Rr466028	regulatory region 466028	118 bp distal
Tssr113445	transcription start site region 113445	1860 bp upstream