rs254598837 SNP Detail

Summary

• ID
  rs254598837
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:107440238 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAGAGATG AAGGGTATAA
  CCTCAATGAA AGATCTATCT ATCTATCTAT CATCTGTTGT AGTAAATCTC TAACCCAAAT
  ATGCCCTGGC AATGAAAACA ATAAAACACA ACTTAGTTAA TATGAATAGA ATACATGCTG
  TGCACCTAGA TTAGGCAGAT CTACCACTAC TCTACCATCT TCCACAGCTT ATGAGACCCC
  K
  TAGACCTTGC AGTTTTTCCA GGCCACGTGC TTCTGCTCTG TTTTTCTTCA TCTTCCTCTG
  TGTCCTCTCC CTCTTCCATT TTCTCCTTCT TCTCTCTTCC AACCTTCCAT ACCACCTTCC
  CTTTATCTGC CCAATCATCA ACTCTCCTTT ATTTTACAAA TTAAGGTGGG AAGCAGGTTT
  ACAGGAAAAC ACATGAGTGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322381904	CHEV_7_114984545	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254598837					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:107440238 () rs orientation: forward

Symbol	Name	Function Class
Gm5002	predicted gene 5002	298 bp upstream
Rr152607	regulatory region 152607	763 bp proximal
Rr381269	regulatory region 381269	within coordinates