rs254602059 SNP Detail

Summary

• ID
  rs254602059
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:136057651 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTTGCAGA AGTCCAGATC
  TTCTGTGTGT TGCTTATGAG ACTATTTCCC CACTTGCAAA ATTGGGGGTA GGGGAGAAGG
  CTAGAACCTG GCTCATAAGG TTAGGAGAAC AAACAAGAAC AAAAGCACCA AGTACCTCCC
  CGTGTAAGCA CCGCTCAGCT CTCCACATCC TCCTTTTGTT AGAAGACAGG GAGCAGCGTC
  Y
  CAATTTCCCA ACACTGTCTC TTGCTCTAAG GAATTTGATT CACTGGCTTT GGGTTTCAGA
  TGCTAATATT AATAAAATAT ATAGGATCCC ACCAGGACCC CTTACACACC ACCATCACCA
  CTACCTCTCT GGGGCTCTGG CTCTCCTCCT GTTTGCTACG AGGGTAGGAA GAATGAGCTG
  ACCTAACTTT CACATTTTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss351559659	MGP_WTSI_1_138026490	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254602059					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351559659	MGP_WTSI_1_138026490	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:136057651 () rs orientation: forward

Symbol	Name	Function Class
Cpgi805	CpG island 805	1204 bp proximal
Gm15850	predicted gene 15850	within coordinates
Kif21b	kinesin family member 21B	1476 bp upstream
Rr396320	regulatory region 396320	1197 bp upstream
Rr419367	regulatory region 419367	1112 bp distal
Rr419368	regulatory region 419368	92 bp proximal
Rr419369	regulatory region 419369	1260 bp proximal
Rr419370	regulatory region 419370	1485 bp proximal
Tssr9041	transcription start site region 9041	1450 bp upstream
Tssr9042	transcription start site region 9042	1469 bp upstream
Tssr9043	transcription start site region 9043	1498 bp upstream
Tssr9044	transcription start site region 9044	1530 bp upstream
Tssr13914	transcription start site region 13914	1262 bp downstream