rs254604053 SNP Detail

Summary

• ID
  rs254604053
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:56261634 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGCGGCGC CAGCAGCAGC
  CTCCTAGCCT TTGTGGCTGA GCGAATCAGT GAGTGTCTGT CCTCCCTGCC CCTCTCCACC
  TGCTCCATCC CGTGGCTCCT CCCTGCCGCC GCCCCCCTAC CCCCACCCAC CTCTTGCTTT
  GTCCCTGCAG CTTCCATCCT TTGGCTCTGC TCCCGCCTCA CAGGCTTCCT GTCGATGCCC
  Y
  GGGGCCTTTG CATTGCTTCC TTCCTTGGCT TTCCTGGGTC TCTGCTCCAA TGTTGGCTCC
  TCAGTGAGGC CTCCCCAAAA GTATATCATT AAACATAAGC AATAGTCACA GTTAAGAGAG
  GATGAAAGCC AAAGGTGGTG TACAAGTCTT TAATCCCAGA GGTAGGCAGA TCTCTGAGAA
  TTCAAGGCCA GCCTGATCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398548980	MGP_WTSI_17_56094057	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254604053					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398548980	MGP_WTSI_17_56094057	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:56261634 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9328	CpG island 9328	1346 bp proximal
Ebi3	Epstein-Barr virus induced gene 3	within coordinates
Gm16712	predicted gene, 16712	137 bp downstream
Tssr145247	transcription start site region 145247	1935 bp downstream
Tssr145248	transcription start site region 145248	1909 bp downstream
Tssr145249	transcription start site region 145249	1895 bp downstream
Tssr145250	transcription start site region 145250	1876 bp downstream
Tssr145251	transcription start site region 145251	1852 bp downstream
Tssr145252	transcription start site region 145252	1838 bp downstream
Tssr145253	transcription start site region 145253	1820 bp downstream
Tssr145254	transcription start site region 145254	1796 bp downstream
Tssr145255	transcription start site region 145255	1772 bp downstream
Tssr145256	transcription start site region 145256	728 bp downstream
Tssr145257	transcription start site region 145257	296 bp downstream
Tssr145258	transcription start site region 145258	263 bp downstream