rs254604909 SNP Detail

Summary

• ID
  rs254604909
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:110359905 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAATCTCCA GCACCATATA
  AACCAGCTCT GGTGCTGTCT CCCTTCCTGT AACCTCTCTA CTATGTGGTC GATGCAGGAG
  GAGGAGAGAT GTTCAAGGTC ATCTTTGGCC AACTTACTGA GGTCAAGGCC AGATGGGATA
  CACAAAACCC TGTCTCAAAA AGAATCAAAA AGAGGAAGTT CGGGGTTTCA CAAGTCCCTC
  M
  TTTTATCCTC ACAGCAGTGA GAGAATCTGT TCACAACAAA ACTTTCATCT TCAGCAGGTT
  GTGGTGTCTG GCACCTGTAA TCCAGGCATC AGGGAAGCTG GGGTAAGGAT TTTGAGTTTG
  AGGTCAGTAT AGCACATAGC AAGTTTCAGC CACAAAGGAA AGCTCACCAA TGAATGCAAA
  ACAAAATGGT CGTGGGAGAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378905077	MGP_WTSI_9_110433341	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254604909					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378905077	MGP_WTSI_9_110433341	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:110359905 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22381	CpG island 22381	997 bp proximal
Gm69936	predicted gene, 69936	746 bp downstream
Rr687127	regulatory region 687127	1633 bp distal
Rr687128	regulatory region 687128	1346 bp distal
Rr687129	regulatory region 687129	within coordinates
Rr687130	regulatory region 687130	402 bp proximal
Rr687131	regulatory region 687131	1509 bp proximal
Rr687132	regulatory region 687132	1510 bp proximal
Rr687133	regulatory region 687133	1771 bp proximal
Setd2	SET domain containing 2	1463 bp upstream
Tssr3032	transcription start site region 3032	1608 bp downstream
Tssr3033	transcription start site region 3033	1856 bp upstream
Tssr87389	transcription start site region 87389	1633 bp downstream
Tssr87390	transcription start site region 87390	1595 bp downstream
Tssr87391	transcription start site region 87391	1601 bp upstream
Tssr87392	transcription start site region 87392	1664 bp upstream
Tssr87393	transcription start site region 87393	1770 bp upstream
Tssr87394	transcription start site region 87394	1805 bp upstream
Tssr91630	transcription start site region 91630	1513 bp downstream
Tssr91631	transcription start site region 91631	1938 bp downstream
Tssr91632	transcription start site region 91632	1943 bp downstream
Tssr91633	transcription start site region 91633	1971 bp downstream
Tssr91634	transcription start site region 91634	1995 bp downstream