rs254605011 SNP Detail

Summary

• ID
  rs254605011
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:45568918 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCAAGCTG GGGGAAGTGC
  TTACTGGTGC AAAGCTGGCA GAGGCCGGTA GCGTAGAAGA GCCCTCCGCG CCGCATGGTG
  TAGAGTTGGA ACATGAAGAG GATGAAGGAC AGGCAGCAGA GGATGAGAGA CAGCACCATG
  AGGGCCTGCA CTGCCTTCAG CCAGCCTACA GGGGGCGACA CAGGTGAGGT CACAGCTGGA
  M
  CCGCTGTTCC CACTGGCTGG ACTCTACTCA CTGTAGGTTC AGCCAGGCAA GCTTCAGAGA
  TGTCCGTGTT ACAAGGATTA CAAGGGTTAC CAGGGAAACA TCTTACTGAT GAGCCCCATC
  CCCACACTCA CTGGCGGTCA CTTCGAATCC TGAAAGGAGG CAGGCCACTC CATCTCTTAG
  AACTCTGGCC TCTCCCTATT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss371187820	MGP_WTSI_7_53174864	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254605011					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss371187820	MGP_WTSI_7_53174864	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45568918 () rs orientation: forward

Symbol	Name	Function Class
Emp3	epithelial membrane protein 3	Intron
Gm72819	predicted gene, 72819	955 bp downstream
Rr400324	regulatory region 400324	1696 bp upstream
Rr646606	regulatory region 646606	1987 bp distal
Rr646607	regulatory region 646607	1506 bp distal
Rr646608	regulatory region 646608	19 bp distal
Rr646609	regulatory region 646609	1347 bp proximal
Tssr2256	transcription start site region 2256	1918 bp downstream
Tssr66660	transcription start site region 66660	1441 bp downstream
Tssr72489	transcription start site region 72489	135 bp upstream
Tssr72490	transcription start site region 72490	662 bp downstream
Tssr72491	transcription start site region 72491	894 bp downstream
Tssr72492	transcription start site region 72492	1133 bp downstream
Tssr72493	transcription start site region 72493	1157 bp downstream
Tssr72494	transcription start site region 72494	1181 bp downstream
Tssr72495	transcription start site region 72495	1187 bp downstream
Tssr72496	transcription start site region 72496	1206 bp downstream
Tssr72497	transcription start site region 72497	1336 bp downstream
Tssr72498	transcription start site region 72498	1617 bp downstream
Tssr72499	transcription start site region 72499	1767 bp downstream
Tssr72500	transcription start site region 72500	1924 bp downstream