rs254606701 SNP Detail

Summary

• ID
  rs254606701
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:106340114 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCTT AACTTGTCTT GTGTCTGCCT
  A
  TGGTTTCTGC CCTCCCTCCC TCCCT                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323185268	CHEV_9_106365246	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254606701					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:106340114 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22267	CpG island 22267	269 bp distal
Cpgi22268	CpG island 22268	1571 bp proximal
Gpr62	G protein-coupled receptor 62	1047 bp downstream
Pcbp4	poly(rC) binding protein 4	within coordinates
Tssr86914	transcription start site region 86914	1020 bp downstream
Tssr86915	transcription start site region 86915	238 bp upstream
Tssr86916	transcription start site region 86916	342 bp upstream
Tssr86917	transcription start site region 86917	465 bp upstream
Tssr86918	transcription start site region 86918	598 bp upstream
Tssr86919	transcription start site region 86919	868 bp upstream
Tssr91318	transcription start site region 91318	1970 bp downstream
Tssr91319	transcription start site region 91319	1987 bp downstream