rs254613795 SNP Detail

Summary

• ID
  rs254613795
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:101677513 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCCTGGCA CCTGAACTGG
  GCTCTTTCTG CCACACAAAC TCCTCCCCTT TACCTACCAA ACTGTTCTTT AAAGTTTGAA
  CCTGCTGCCG CTCTCCTCTA GGGACCCCCC TTTTCATGAG AGCCTGGGTC AGTCCATATA
  TATGGTGAGG TATCTTTCAT TCTCTTCCCT GTTAGAGAAA TCCCTATATA GTTATGGGGA
  K
  CTCTGCGGGG GCCCAGAGGA GGACTCCTTC CTTGAGCCTC GCTCGCACTC AAGAGTTGCA
  CAAAATGCCT GTCAGGTGAA CAGCTACAAT AAAAAGCTAA GTAATGGAGT TTTGCAGGCA
  CCCTGCCCAA GGAAAGACAG GCAAGCCCAA GCAAATCCCG GCTTGGGGCG GATGGAGCCA
  GTTTAGGGAG GGGTGTGAGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384487386	MGP_WTSI_11_101648001	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254613795					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384487386	MGP_WTSI_11_101648001	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:101677513 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3886	CpG island 3886	879 bp distal
Etv4	ets variant 4	1316 bp upstream
Gm39392	predicted gene, 39392	402 bp upstream
Gm71843	predicted gene, 71843	within coordinates
Rr386582	regulatory region 386582	within coordinates
Rr402993	regulatory region 402993	1113 bp downstream
Rr457077	regulatory region 457077	1709 bp distal
Rr457078	regulatory region 457078	826 bp distal
Rr457079	regulatory region 457079	60 bp proximal
Tssr105162	transcription start site region 105162	1041 bp upstream
Tssr105163	transcription start site region 105163	1077 bp upstream
Tssr110969	transcription start site region 110969	1854 bp upstream
Tssr110970	transcription start site region 110970	1831 bp upstream
Tssr110971	transcription start site region 110971	1505 bp upstream
Tssr110972	transcription start site region 110972	1467 bp upstream
Tssr110973	transcription start site region 110973	1446 bp upstream
Tssr110974	transcription start site region 110974	1398 bp upstream