rs254615621 SNP Detail

Summary

• ID
  rs254615621
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:175459091 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTAACATA CTCTCCTACA
  GGGGCACTAT CGGGTGGTGT TTCCTTCCAG TCCCTACCCA AAGAAATGCC ATTTGTGTTC
  TCATCAGAAA TTGGAAAAAC CAATAAATCT TCATTGATGC TCTTATTTTA TTTTAATCAC
  AATACGATCT AGAAAAGAAG CACAACTCAC GAATAGGCCC CCAAACCAAG CACTATACGT
  C
  TCAAATGAAG TAGAGATGTC AAAGTGATGA GACACCCTCA AACCACACAT TTGAGTAGAG
  ATGCAGGGTG TTCACCATCT TGCCCATGGC AAAGCATGAG CTAGATTCTA AAGTCCTAGG
  CAAGAAAAAA ACAAACAAAG CAAAACTCTG GTCAGTCTAG TTACACCTCT AGAAATCCTA
  CTCAGGAGAT TATTATGACA                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320151885	CHEV_1_177561656	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254615621					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:175459091 () rs orientation: forward

Symbol	Name	Function Class
Kmo	kynurenine 3-monooxygenase	668 bp upstream
Rr396618	regulatory region 396618	293 bp upstream
Rr423839	regulatory region 423839	within coordinates
Tssr10313	transcription start site region 10313	443 bp upstream
Tssr10314	transcription start site region 10314	471 bp upstream
Tssr10315	transcription start site region 10315	490 bp upstream
Tssr10316	transcription start site region 10316	519 bp upstream
Tssr10317	transcription start site region 10317	539 bp upstream
Tssr10318	transcription start site region 10318	571 bp upstream
Tssr10319	transcription start site region 10319	579 bp upstream
Tssr10320	transcription start site region 10320	595 bp upstream
Tssr10321	transcription start site region 10321	616 bp upstream
Tssr10322	transcription start site region 10322	630 bp upstream
Tssr10323	transcription start site region 10323	644 bp upstream