rs254615869 SNP Detail

Summary

• ID
  rs254615869
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135777784 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCTTGTGG CCAGTCAGTT
  CCTCACGCCT ACTAGATATC TCCCTTTCAA GGCTGAGCTC TGATTGATTT CTTTCTACCT
  TTTTTTTTTT TTTTTTTTTT TTGAGACAGG GTCTCACTGT ATAGCCCTGG CTGTCCTGGA
  ACTCACTATG TAGATGAGAC TTGCCTCAAA CTCACAGAGA TCCATTTAAC CTCTGTCTCC
  Y
  GAGTGCTGGG ATAAAGGCAT GGACTTGCCC AGCCAAGCCT GATTTTTTTT TTTTTTTGTA
  TGCATGGAGG CATCAGAATA TTTTGTTTTA GATAACCTAA GTCCCTACTT CTGCTGGTGT
  GTCTCTGTAC TCGCAGTGAC CATGCCAGGC AAACGCAATC CAAACCACAC GGTCCTAAGC
  CCCAGACCTA TGCTTGGCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss351552096	MGP_WTSI_1_137746623	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254615869					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351552096	MGP_WTSI_1_137746623	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135777784 () rs orientation: forward

Symbol	Name	Function Class
Rr12645	regulatory region 12645	617 bp proximal
Tnnt2	troponin T2, cardiac	within coordinates
Tssr227	transcription start site region 227	601 bp upstream
Tssr9019	transcription start site region 9019	1969 bp downstream
Tssr9020	transcription start site region 9020	1198 bp downstream
Tssr9021	transcription start site region 9021	1178 bp downstream
Tssr9022	transcription start site region 9022	690 bp downstream
Tssr9023	transcription start site region 9023	616 bp downstream
Tssr9024	transcription start site region 9024	580 bp downstream
Tssr9025	transcription start site region 9025	290 bp downstream
Tssr9026	transcription start site region 9026	92 bp downstream
Tssr9027	transcription start site region 9027	11 bp upstream
Tssr9028	transcription start site region 9028	51 bp upstream
Tssr9029	transcription start site region 9029	631 bp upstream
Tssr9030	transcription start site region 9030	666 bp upstream
Tssr9031	transcription start site region 9031	725 bp upstream
Tssr9032	transcription start site region 9032	1308 bp upstream
Tssr13892	transcription start site region 13892	1959 bp upstream
Tssr13893	transcription start site region 13893	1942 bp upstream
Tssr13894	transcription start site region 13894	1193 bp upstream
Tssr13895	transcription start site region 13895	1149 bp upstream
Tssr13896	transcription start site region 13896	622 bp upstream
Tssr13897	transcription start site region 13897	594 bp upstream
Tssr13898	transcription start site region 13898	691 bp downstream
Tssr13899	transcription start site region 13899	759 bp downstream
Tssr13900	transcription start site region 13900	769 bp downstream
Tssr13901	transcription start site region 13901	1330 bp downstream