rs254617361 SNP Detail

Summary

• ID
  rs254617361
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:5899038 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTGCTTC TTGTCTCAGA
  AGCCTTTGGC TGGTGTCCTG GGCGTGTGAA GAACTTCAGC CAGACTTCAG GCCGTGACTT
  GCAGAATGCA ACAGAGATGG TATCAGCCCC CATCCAAAGC TCCCAGGGCT GTGTTTCTGA
  TTTATCCCCG TACTTTGCTG AGCACTTAGC CTGGCCCTGG CCCTAGGGTC TTGGATTCCC
  K
  GCTTCTTTGT CCCTCCCCTT CCCGGACCTT TCCCTGAGCT CACCTTTCTG ACACCATTTC
  CTCTTTTCTC AGCCCCCAGT TCTCTGTGCC CAGAGGTGCT CTGGCAGGAG GTAGGAACTG
  TAGCCCAGCA GACAGGCTTC GTTTACCCTG GGGGTTCAGT AACCTCCATG ACCCCTCTGG
  TGCTTGCTCA CAAACGGCCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401663617	MGP_WTSI_19_5849010	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254617361					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401663617	MGP_WTSI_19_5849010	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:5899038 () rs orientation: forward

Symbol	Name	Function Class
Frmd8	FERM domain containing 8	1964 bp downstream
Frmd8os	FERM domain containing 8, opposite strand	within coordinates
Gm59609	predicted gene, 59609	596 bp upstream
Gm59610	predicted gene, 59610	within coordinates
Rr370436	regulatory region 370436	within coordinates
Rr543199	regulatory region 543199	1416 bp distal
Rr543200	regulatory region 543200	616 bp distal
Rr543201	regulatory region 543201	494 bp distal
Rr543202	regulatory region 543202	within coordinates
Rr543203	regulatory region 543203	223 bp proximal
Rr543204	regulatory region 543204	1349 bp proximal
Rr543205	regulatory region 543205	1838 bp proximal
Tssr154520	transcription start site region 154520	488 bp downstream
Tssr154521	transcription start site region 154521	342 bp downstream
Tssr157783	transcription start site region 157783	886 bp upstream
Tssr157784	transcription start site region 157784	933 bp downstream
Tssr157785	transcription start site region 157785	994 bp downstream