rs254617601 SNP Detail

Summary

• ID
  rs254617601
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:73056700 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGCCGCCCC GAGGCTACGC
  CGCGGCCCCA CAGGCCCCGC CGCCCTCGCC TGCCCCGCCC GCCAACCGCC AACCGCCGCG
  GCACGAGTGC CGGGCGCCGC GCGGACTCAC CGGGGCCGGC TCCCGAGTAC ATGGTGGCGT
  TGCCGAGGGC CGCGGCCGAG GGCCGGCCGC GCGCTCCACG GGCCCCGACG CCGCGAGCCG
  S
  GAGGAGCCGC CGGCCGCTCG ATCCGCCCCG GCGCGGCCGC CTCGCAGAAC AGGTTTACCC
  GACGCGGCCG GGGCGGCGGG CGGAGGCGGC GGGAGCGGAG GGGGAGGGGA GCGGGAGGAG
  GGAGGGGAGG AGGAGGGGCG AGAGGGACGA CGAGGGAGGG GACGGCGGGG AGGGAGGGAA
  GGAGGGGACA GCGGGGAGGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss394546501	MGP_WTSI_15_73015281	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	G	C	G	C	C	G	G	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254617601					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	G	C	G	C	C	G	G	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394546501	MGP_WTSI_15_73015281	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:73056700 () rs orientation: forward

Symbol	Name	Function Class
Ago2	argonaute RISC catalytic subunit 2	within coordinates
Cpgi7161	CpG island 7161	within coordinates
Rr404436	regulatory region 404436	119 bp upstream
Rr504021	regulatory region 504021	74 bp proximal
Rr504022	regulatory region 504022	386 bp proximal
Rr504023	regulatory region 504023	600 bp proximal
Rr504024	regulatory region 504024	1575 bp proximal
Tssr134684	transcription start site region 134684	12 bp downstream
Tssr134685	transcription start site region 134685	394 bp downstream
Tssr134686	transcription start site region 134686	419 bp downstream
Tssr134687	transcription start site region 134687	451 bp downstream
Tssr134688	transcription start site region 134688	470 bp downstream