rs254623999 SNP Detail

Summary

• ID
  rs254623999
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:40058932 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGTGCCAG GGGATGGGAG
  TCATTGTAGC AGAGCATATG CCATAAGGTA CTTATGTCAA TGGAGGCCCC AACAGCACCC
  AGGGTTAGAA GAAGTTACAA GAAGCCAGGC ATGGCATGAC ACAGGAACCA ATGTCATTTG
  AAGGAGTTGC AAAAGGATCC CAGAAGTCAC TTGTGTTGAT GACTTGTCCA GAGGTGAAAG
  R
  TCTTTTAAGG AGATGATAGT AGGGTGCTCT GCCCAGCCCA GCTGATCTTA AAAGGGTCTT
  GCCCCAATAT GATCAGGGAG TTATACTGAT CCTGACATGC ATATGAAAGA GGAAATCATG
  GTTATTTTAC TATATTTAAA TCATGCCCAA AGTATAAAAA ATATACATTG AATTCATTCC
  ATACAAAGTT TAAAGATAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss374370438	MGP_WTSI_8_40691245	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254623999					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss374370438	MGP_WTSI_8_40691245	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:40058932 () rs orientation: forward

Symbol	Name	Function Class
Msr1	macrophage scavenger receptor 1	within coordinates
Tssr2550	transcription start site region 2550	417 bp upstream
Tssr80996	transcription start site region 80996	1309 bp upstream
Tssr80997	transcription start site region 80997	1286 bp upstream
Tssr80998	transcription start site region 80998	873 bp upstream
Tssr80999	transcription start site region 80999	811 bp upstream
Tssr81000	transcription start site region 81000	627 bp upstream
Tssr81001	transcription start site region 81001	611 bp upstream
Tssr81002	transcription start site region 81002	585 bp upstream
Tssr81003	transcription start site region 81003	559 bp upstream
Tssr81004	transcription start site region 81004	507 bp upstream
Tssr81005	transcription start site region 81005	482 bp upstream
Tssr81006	transcription start site region 81006	445 bp upstream
Tssr81007	transcription start site region 81007	380 bp upstream
Tssr81008	transcription start site region 81008	279 bp upstream
Tssr81009	transcription start site region 81009	248 bp upstream
Tssr81010	transcription start site region 81010	226 bp upstream
Tssr81011	transcription start site region 81011	159 bp upstream
Tssr81012	transcription start site region 81012	130 bp upstream
Tssr81013	transcription start site region 81013	27 bp downstream
Tssr81014	transcription start site region 81014	54 bp downstream
Tssr81015	transcription start site region 81015	1656 bp downstream