rs254628976 SNP Detail

Summary

• ID
  rs254628976
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:23119650 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTGCCCCTAC AGTGGCTGTG GGAAAGTCTA TGGAAAATCC
  TCCCATCTTA AAGCCCATTA CAGAGTGCAT ACAGGTTAGC GGCGTCGCCT CTCCCCCGCT
  Y
  CGGGCTTTAG CTAACCTTTG GCCGGCCAGC ATTCCTGGGC GCCCAGGACA CCGCACTCGG
  CCTAGAGGCT GCAAACATTT TGGAGAAGAT GCTGCTTAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325768036	CHEV_19_23216776	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254628976					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:23119650 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10683	CpG island 10683	within coordinates
Gm56648	predicted gene, 56648	1131 bp upstream
Gm59174	predicted gene, 59174	1659 bp downstream
Klf9	Kruppel-like transcription factor 9	Intron
Rr405898	regulatory region 405898	1385 bp downstream
Rr545291	regulatory region 545291	1183 bp distal
Rr545292	regulatory region 545292	1050 bp distal
Tssr155579	transcription start site region 155579	1445 bp downstream
Tssr155580	transcription start site region 155580	1335 bp downstream
Tssr155581	transcription start site region 155581	1319 bp downstream
Tssr155582	transcription start site region 155582	1282 bp downstream
Tssr155583	transcription start site region 155583	1253 bp downstream
Tssr155584	transcription start site region 155584	1209 bp downstream
Tssr155585	transcription start site region 155585	1149 bp downstream
Tssr155586	transcription start site region 155586	1023 bp downstream
Tssr155587	transcription start site region 155587	619 bp downstream
Tssr155588	transcription start site region 155588	585 bp downstream
Tssr158621	transcription start site region 158621	1633 bp upstream
Tssr158622	transcription start site region 158622	1313 bp upstream
Tssr158623	transcription start site region 158623	210 bp upstream
Tssr158624	transcription start site region 158624	84 bp downstream