rs254629893 SNP Detail

Summary

• ID
  rs254629893
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146206652 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCAGCAGGC TAGTCCTTAT
  TTCTAACGTG CTTTTGGAGA AGGCTTCTAT TTAGCTTTCT TCTCAAGTAG AAATGTCAGA
  GACTGCTCAA CTTCCTTGTG GTAACCATAG GAGGAGGGTA GGGAGACGCC CAATCAGTCT
  TGGTTTGGAC TCTAATCATA TTCTCACTTT TCATCCAAGT GACTTAGTCT TGGCCAGATT
  R
  GAGCTCTGAA ATTTGAAGTG ATCTATTGAT CATCATCATT CATATATAAT AACTGTCATA
  AAGTAGGCCA GGAAGGAAAA AAATAGTGGG TTGGGGGAGG AAATAAAGAC AGGTACGTGT
  AGTAATTACA GTGGCGGTAC TTAACCCTGG TGGCCCAAAG CAGTGAGCTA GCTCCCAGAG
  GAGGACTTCC TTTTCTTTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss360119587	MGP_WTSI_3_146163861	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254629893					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss360119587	MGP_WTSI_3_146163861	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146206652 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13920	CpG island 13920	374 bp distal
Gng5	G protein subunit gamma 5	within coordinates
Rr77342	regulatory region 77342	within coordinates
Rr398118	regulatory region 398118	204 bp downstream
Spata1	spermatogenesis associated 1	1144 bp upstream
Tssr32351	transcription start site region 32351	1133 bp downstream
Tssr32352	transcription start site region 32352	1054 bp downstream
Tssr32353	transcription start site region 32353	1011 bp downstream
Tssr32354	transcription start site region 32354	805 bp downstream
Tssr32355	transcription start site region 32355	763 bp downstream
Tssr32356	transcription start site region 32356	712 bp downstream
Tssr32357	transcription start site region 32357	686 bp downstream
Tssr36036	transcription start site region 36036	1094 bp upstream
Tssr36037	transcription start site region 36037	1079 bp upstream
Tssr36038	transcription start site region 36038	775 bp upstream