rs254639305 SNP Detail

Summary

• ID
  rs254639305
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:9672777 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATATTCAGC ATGTAACTTC
  TAAGAAGTTG TATGCAATGT ACTATAAAAT TTGTGAGCAA AGCAATGTGT TAGAAATTTG
  AAAAAATTTG AATTTATTTG GAGATGTGAA AAATCTCTGC TAATGCTAAC AATCACACCC
  TAGATATTCC TAGTTTAAAG AACAGATTTC TTTCCTACAC TGGGCCTACT TGGATTACAG
  R
  GCATAACATA TTAATCTTTC TGTCTCAACT TGTATAATCA CCCCAGACAC ATTTTGAGTG
  TGTATGAACA ACACTGCTCA GGGGGCACTC TGTCTTATTC AGTGTCACTG ATGCTATGGA
  ACTTAATTCA AATCCCGCTA TATCCTGTTG CCACACAAAG CGGGCTTTTC AGCAGGCAGC
  AGTAATGAGT GTGGGCACAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320651677	CHEV_3_9607717	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254639305					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:9672777 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12974	CpG island 12974	877 bp proximal
Gm56803	predicted gene, 56803	1046 bp upstream
Rr78141	regulatory region 78141	23 bp proximal
Tssr28346	transcription start site region 28346	1086 bp upstream
Tssr28347	transcription start site region 28347	1109 bp upstream
Zfp704	zinc finger protein 704	within coordinates