rs254644162 SNP Detail

Summary

• ID
  rs254644162
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:155116652 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTAGAAGA GGAGTCAGTG
  CTCTTAACCC CTGAGCCATC TCTCCAGCCC CATTTCTATT CTCTTAATGA TCTTTCCTGC
  TGTGTCTTTT TTTTTTTTTT TTTTACATTT ATCTATTTGC TGTGTGGAAG TTGTTCTTCT
  ACCACCATAG ACAGAAAATA TTTTAATATT TAAAATATTA AAAAAAATTC TTCTCGGATT
  M
  AGTAGAGAGA TGTCCTGAGA CAGATTTAGT AATCCTGTCA CTTGCTGAAA GGGAAGCCAG
  AACATTGCAG AAACCTCAAA ACAAAGGCTA ATCCTTGCAC TAACAGATTT TCTTGTAGGG
  GAAGGTGTCT AAGGTTAGTG AAGGCACTAA ATAGGACTTA AGGTCATAAT TTAGGGAAGT
  AATCCTACCG CCCCACCCTA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356211879	MGP_WTSI_2_155100468	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254644162					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356211879	MGP_WTSI_2_155100468	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:155116652 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12515	CpG island 12515	1304 bp proximal
Gm75512	predicted gene, 75512	within coordinates
Map1lc3a	microtubule-associated protein 1 light chain 3 alpha	1632 bp upstream
Rr568016	regulatory region 568016	1020 bp proximal
Rr568017	regulatory region 568017	1515 bp proximal
Tssr21073	transcription start site region 21073	1607 bp upstream
Tssr21074	transcription start site region 21074	1686 bp upstream
Tssr21075	transcription start site region 21075	1748 bp upstream
Tssr21076	transcription start site region 21076	1771 bp upstream
Tssr21077	transcription start site region 21077	1850 bp upstream
Tssr21078	transcription start site region 21078	1864 bp upstream
Tssr21079	transcription start site region 21079	1887 bp upstream
Tssr21080	transcription start site region 21080	1985 bp upstream