rs254656334 SNP Detail

Summary

• ID
  rs254656334
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:87828339 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGTGGGTC TAGTATAGAA
  TAAAGTTTAT TTGGGGGCAT GGGAAGGGAG TTGAGAAGGA AGTAGAGGTG AAGAAAGAGG
  GGACAGAGAA GGACAGACAG AAAGAGAAGA GGCCGGTCAG AAACATGTGG AGGTGAGATG
  GGGAGAAAGG TCTGAGGATC TGAGACCAAA CCATCCCTTT TATAAGCAAG CCGGGACCAC
  M
  CAACAGCTGT TTTTACCCCT GCTATTGCTA TTCACTTGTC TTGTGATTGC TTGCCTGTGG
  ACTGTCCTAG TACTTTCTTC CATTACCTGT TTTCCTCCTG CTCTAATGTT CATGTACTCA
  CGTAATAACT CTCTTAAGTA CCTTCAGTGC CAAGGTCTCC TGAGATAGCT AGCAATCCAA
  GCTAGATAGT GTAGCCCCTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358786220	MGP_WTSI_3_87724954	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254656334					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358786220	MGP_WTSI_3_87724954	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87828339 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13346	CpG island 13346	1175 bp distal
Gm64606	predicted gene, 64606	1629 bp upstream
Mettl25b	methyltransferase like 25B	1569 bp downstream
Mrpl24	mitochondrial ribosomal protein L24	within coordinates
Rr367453	regulatory region 367453	1479 bp downstream
Tssr29862	transcription start site region 29862	1535 bp downstream
Tssr29863	transcription start site region 29863	1506 bp downstream
Tssr29864	transcription start site region 29864	1474 bp downstream
Tssr29865	transcription start site region 29865	1456 bp downstream
Tssr29866	transcription start site region 29866	1355 bp downstream
Tssr29867	transcription start site region 29867	1319 bp downstream
Tssr29868	transcription start site region 29868	863 bp upstream