rs254662098 SNP Detail

Summary

• ID
  rs254662098
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:38720617 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGAGTCAG GCATACCTGT
  TTGTTGCAGG GAACTGTGGG GTGGTGCCTA GAAGGAATGC CAGTACCACC TGGTTAATTT
  CTCTCAAAAG TGGTGACTTC CAGCTACTAT CTCAATGATT CACCTGTCTG TCCCAGCCTT
  TACACTGCAA CTTCCTGGGG TCCTTAGTTT GCTTTCCCCA TTTGCATTGT TGATGTTGCC
  R
  TAGAACCACC AAACTGCCCA CCAGCAACAC ATGGCTCCTT AACTACAATT ATGATTTCAG
  AACAGTCCCA CTGTTAGTCT TCTAGCGACC TCACTGCACT GTGCAGATGA AAGACACTTT
  CCCTGGGTCT GGTCGAGCAC TGTCCTAGGG ATGTGCTAGG GATATTTTCA ACAAGCAAGA
  GGTCTGTCCT AGGATTCTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss364599153	MGP_WTSI_5_38954513	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254662098					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss364599153	MGP_WTSI_5_38954513	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:38720617 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15817	CpG island 15817	1091 bp distal
Gm57313	predicted gene, 57313	1133 bp downstream
Gm72219	predicted gene, 72219	103 bp upstream
Rr399063	regulatory region 399063	1295 bp downstream
Tssr46063	transcription start site region 46063	1349 bp downstream
Tssr50814	transcription start site region 50814	1652 bp upstream
Tssr50815	transcription start site region 50815	1634 bp upstream
Tssr50816	transcription start site region 50816	1594 bp upstream
Tssr50817	transcription start site region 50817	1542 bp upstream
Tssr50818	transcription start site region 50818	1482 bp upstream
Tssr50819	transcription start site region 50819	40 bp upstream
Tssr50820	transcription start site region 50820	22 bp upstream
Wdr1	WD repeat domain 1	352 bp upstream