rs254667342 SNP Detail

Summary

• ID
  rs254667342
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:98308447 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAGCACAGT AGGCAGCATC
  CAGGGTCAGA GGAAGAAGCA ATGGGGTAGA GGAGGCCCTA ACCCCTCCAA GAGTGGGAAA
  CTGGTGACCT GCAGGCCCCA ATTAGCAATA CCACAGCAGA CTCCGGAAGG TCAGTCAGCC
  TCAGGCCTCT GTCAGCATTC TGGGATTTCT CAGAGGCCAG GATACTCCCA GTGTCTCTTG
  Y
  ATGGTCTTCT GTCCAGAACT AGCTTGTGTT TGCTTCCAGG ATCTGCCTTG CTTTGCAGGA
  AAGGGAAGCT TGCTACCCTT CCCTCACTTG CCAAGGGTAT TTATAGTGGC CTACTGTATA
  CCCTGCACTT CCCACCACAG CTCAGGGAAG GGGCAACTGG GAACTCCCTA TTCAGCCAGT
  GACTAGAGGG AAGAAAATTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323129393	CHEV_9_98326813	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254667342					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:98308447 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22178	CpG island 22178	701 bp distal
Rbp1	retinol binding protein 1, cellular	within coordinates
Rr685258	regulatory region 685258	986 bp proximal
Rr685259	regulatory region 685259	1866 bp proximal
Tssr2984	transcription start site region 2984	1290 bp downstream
Tssr86646	transcription start site region 86646	1562 bp downstream
Tssr86647	transcription start site region 86647	1489 bp downstream
Tssr86648	transcription start site region 86648	1459 bp downstream
Tssr86649	transcription start site region 86649	1424 bp downstream
Tssr86650	transcription start site region 86650	1064 bp downstream
Tssr86651	transcription start site region 86651	881 bp downstream