rs254673481 SNP Detail

Summary

• ID
  rs254673481
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:131955256 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTTAAATT CAGCGCTCTG
  GGAAGGGCAG GTGGATCTAC AGAGCTAGCT CCAGGACAGC CAAGACTATA CAGAGAAATC
  CTGTTGAAAG AAGGGGCTAG GACCATCATG GGAGAGACTA GAAAAATGGC TTTTTAAATA
  AAGGGCTAAC TGTGAACCTG AAGCCCAAGT TAGACCCTCA GAACCCCTTT CAAAGATAAG
  R
  AGCCAGGCAT GGTGGCACAT GGTTGTGACC CAGCACTGGG GAGGGAGTGA GGATGGTCCC
  TAGGACTTGC TGGTCAGCTG GTTTAGCCTG ACTGGTGAGC TACAGGCCAG TGAGAGACCC
  CTATCTCAAA GGAAATGACA TTGCTGGATG GCACCCAAGG TTGTCCTCTG GCCTCTACAT
  GCCCATGCAC ACACATATAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355698284	MGP_WTSI_2_131939072	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254673481					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355698284	MGP_WTSI_2_131939072	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:131955256 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr397328	regulatory region 397328			1599 bp downstream
Rr565399	regulatory region 565399			1538 bp distal
Rr565400	regulatory region 565400			697 bp distal
Rr565401	regulatory region 565401			453 bp proximal
Rr565402	regulatory region 565402			819 bp proximal
Rr565403	regulatory region 565403			1038 bp proximal
Slc23a2	solute carrier family 23 (nucleobase transporters), member 2			Intron
				Noncoding-Transcript-Variant
Tssr26451	transcription start site region 26451			1871 bp upstream
Tssr26452	transcription start site region 26452			1858 bp upstream
Tssr26453	transcription start site region 26453			1828 bp upstream
Tssr26454	transcription start site region 26454			982 bp upstream
Tssr26455	transcription start site region 26455			1261 bp downstream