rs254687402 SNP Detail

Summary

• ID
  rs254687402
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:35724364 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACAAATGCT TCCCGGATAA
  TGGCAAACCT TACCACAGAC TTCCTCATTT CGCTCTCCAC AACATGTGGG GTAGAAAAAT
  GAGAATGGAC TTTGCAATGA TTTTACTGAC GTCAGCAATC ATCCTTTATG AGATGGAACT
  GAGTTCACAT GTGTGTGCTG GGGATGAGGG ACTGCGGGGC AGAGAATATA ACTCAGCCAA
  R
  TGTGCATGGC AGTACACATC TCCAGTCCTA GCAGTTGAGA GGCTGTGAGT TGAAAGTCCA
  GGGCCAGAGT CAAACACGGA AGTCTCTTCT TTAGCTAGGT GCATCCTGAT TTAGTCAGAG
  TACAAGTTTC TGGCTTTACT ACCTGTGTTG CTAAATCTAA TGACTTGGGA CTAAAAAAAA
  CCAAACCAAA TCAAAAACGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382990249	MGP_WTSI_11_35647039	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254687402					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382990249	MGP_WTSI_11_35647039	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:35724364 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2730	CpG island 2730	647 bp proximal
Rars1	arginyl-tRNA synthetase 1	within coordinates
Rr402482	regulatory region 402482	834 bp upstream
Rr445140	regulatory region 445140	924 bp distal
Rr445141	regulatory region 445141	within coordinates
Rr445142	regulatory region 445142	457 bp proximal
Rr445143	regulatory region 445143	686 bp proximal
Rr445144	regulatory region 445144	959 bp proximal
Rr445145	regulatory region 445145	1051 bp proximal
Tssr3462	transcription start site region 3462	837 bp downstream
Tssr3463	transcription start site region 3463	920 bp downstream
Tssr107407	transcription start site region 107407	230 bp upstream
Tssr107408	transcription start site region 107408	955 bp downstream
Tssr107409	transcription start site region 107409	981 bp downstream