rs254687503 SNP Detail

Summary

• ID
  rs254687503
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:31123186 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GCTGTGGCG CTGGGCTCTC CCCGTCTCTC
  GCACAGCCAG GCTACAGCGC TTCCCTACCG CGACCCAGAA GCGTCTGAAG CCCGTTCGCC
  GCCGCCCCGG GGGTTTTACA TCGACCGGAA CTGACTTCAC AAAACCACGC CCCTCTTCGA
  Y
  AGGACCCAAT ACGAGCCGGC ATAACTGGCC TAAGATACCT CCCCTTGTTT AGCCCAGGTC
  CAATCAGAGC ACGGATACAC CGACTCCCCT CCCCGCCCAG CGCGTGCCCC CTCGTGGCCC
  CGCCCCAAGC CACGGCCAGC CCCGCCCCCG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322889597	CHEV_9_31019475	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254687503					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:31123186 () rs orientation: forward

Symbol	Name	Function Class
Aplp2	amyloid beta precursor-like protein 2	75 bp upstream
Cpgi21527	CpG island 21527	within coordinates
Gm69111	predicted gene, 69111	134 bp upstream
Rr206148	regulatory region 206148	within coordinates
Rr401293	regulatory region 401293	within coordinates
Tssr84218	transcription start site region 84218	523 bp downstream
Tssr88645	transcription start site region 88645	66 bp upstream