rs254697597 SNP Detail

Summary

• ID
  rs254697597
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:189075187 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGCTGACC CTCCTCTCTG
  GAAACTGTCT TAAGCTGCGC CAAACCAACA CCCGAGGGAG GCAAACGCAA AAACCCCAGG
  CACCAGCGGA AAAGCGCAAG ACGGAGCCAG GAATGTATGC GTGCTGGGGT TGAGGTCACC
  AAGCCCGAAT CACATCCAAC CCACAGAATG GAGAGGAAGA TGAGAAGCTA GGGGACCTGC
  R
  TTGCCCTCCC GGGAGAGCGT GCGCGGGCCA GGATGGATGC CCAGGGTCTC ACCTCCTGCA
  GTATAGCCGG GTCTCTCCCG CGAGGCGCTG GCAAGCATGA GGCATGCAGC ATTCAAAATG
  TTTGTTTGTT TGTTTGTTTT AACACAGACT TGGTGCTTTT TTCTTTTCTT TCTCTCTCTC
  TCTCTGTTTT CTTTTCTTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352785887	MGP_WTSI_1_191166869	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254697597					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352785887	MGP_WTSI_1_191166869	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:189075187 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
A430027H14Rik	RIKEN cDNA A430027H14 gene			61 bp upstream
Cpgi1195	CpG island 1195			within coordinates
Kcnk2	potassium channel, subfamily K, member 2			Intron
				Noncoding-Transcript-Variant
Rr425779	regulatory region 425779			1149 bp distal
Rr425780	regulatory region 425780			within coordinates
Rr425781	regulatory region 425781			202 bp proximal
Rr425782	regulatory region 425782			355 bp proximal
Rr425783	regulatory region 425783			452 bp proximal
Rr425784	regulatory region 425784			707 bp proximal
Rr425785	regulatory region 425785			965 bp proximal
Rr425786	regulatory region 425786			1005 bp proximal
Rr425787	regulatory region 425787			1192 bp proximal
Tssr15712	transcription start site region 15712			352 bp downstream
Tssr15713	transcription start site region 15713			717 bp downstream