rs254700349 SNP Detail

Summary

• ID
  rs254700349
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:45650849 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTGCCGAC GGCCCCGCCC
  CCAAGGCCCC GCACAGGTCC GGCTTTCCAA GCGCGCGTCC GGCGACCCCG GAGGTCCCGC
  CTCCAGGCGC GCGCCCTGCC ACGCGCCACG TGCTCCTTCT CTGGAGGGCG GCGCCGAGGG
  CCGAGCCGAG AAGATGTACT TGCTGCCCCT TCCGGCTGCC GCGCGAGTCG CGCTCCGCCG
  Y
  CTGGGAGTGA GAGGTCTCTG GGATCGGGGT CTGTCCACCG CAGACATGAC GAAGGTGAGT
  GGAGGCGGCT CGCTCTCGGG CGGCCGCGCG AGCCCTGGCG GCGGGCAGCA GGGTGACCCG
  GCGTATCCAG GCCGCGATGT GTCGGACGGA CGCATCAAGT TGCAGAAATG AGCTGAACAG
  AAAAGTTCCC TGGGTTTGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss364763742	MGP_WTSI_5_45884746	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254700349					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss364763742	MGP_WTSI_5_45884746	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:45650849 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15838	CpG island 15838	within coordinates
Gm71433	predicted gene, 71433	250 bp upstream
Lap3	leucine aminopeptidase 3	within coordinates
Rr377893	regulatory region 377893	1330 bp upstream
Rr399075	regulatory region 399075	70 bp downstream
Rr611067	regulatory region 611067	1299 bp distal
Rr611068	regulatory region 611068	289 bp distal
Rr611069	regulatory region 611069	123 bp distal
Rr611070	regulatory region 611070	within coordinates
Rr611071	regulatory region 611071	1861 bp proximal
Tssr1476	transcription start site region 1476	123 bp downstream
Tssr46135	transcription start site region 46135	70 bp downstream
Tssr46136	transcription start site region 46136	41 bp downstream
Tssr46137	transcription start site region 46137	9 bp downstream