rs254705033 SNP Detail

Summary

• ID
  rs254705033
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:122825305 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGGAAAAT TGTGTGGTCA
  GCTGGGGGTG GGGATGGTGG TGGTGCTCAT CTGGTTACTA TAACAAGAGA CCTGGGAGTC
  TGAAGCTAGA TTGTGTGTGC TACACTGAGA TGATGGCACG AAGGCAAGCA AAACCCGACA
  ACAAAGGGAA GAGAAAAATG ATCACGAACA GATTAATGTG TGATACCAGT CAACACTGGG
  R
  TGCTGGATGA AAATGTAGGT AAAGTAAATC AAAATCAAGA CAGCCTTTTC TTCCTGTCTA
  CAAAGATCAG CAGCATAAGA GGTGTTTTAG GCACACCATG GTAAATATCA GAAGGAACAG
  CTACAATTCT TGCAAAGTAG GGAGAGATGG GAACTACTGG GCACTGGAGA AACCACCCTT
  TTTTATTTCA TTTTTAATTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369914753	MGP_WTSI_6_122798364	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254705033					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369914753	MGP_WTSI_6_122798364	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:122825305 () rs orientation: forward

Symbol	Name	Function Class
C3ar1	complement component 3a receptor 1	within coordinates
Tssr58709	transcription start site region 58709	370 bp downstream
Tssr58710	transcription start site region 58710	150 bp downstream
Tssr62965	transcription start site region 62965	1811 bp upstream
Tssr62966	transcription start site region 62966	560 bp upstream
Tssr62967	transcription start site region 62967	515 bp upstream
Tssr62968	transcription start site region 62968	467 bp upstream
Tssr62969	transcription start site region 62969	147 bp upstream
Tssr62970	transcription start site region 62970	127 bp upstream
Tssr62971	transcription start site region 62971	67 bp upstream
Tssr62972	transcription start site region 62972	24 bp downstream
Tssr62973	transcription start site region 62973	83 bp downstream
Tssr62974	transcription start site region 62974	150 bp downstream
Tssr62975	transcription start site region 62975	261 bp downstream
Tssr62976	transcription start site region 62976	307 bp downstream
Tssr62977	transcription start site region 62977	370 bp downstream
Tssr62978	transcription start site region 62978	447 bp downstream
Tssr62979	transcription start site region 62979	478 bp downstream
Tssr62980	transcription start site region 62980	503 bp downstream
Tssr62981	transcription start site region 62981	522 bp downstream
Tssr62982	transcription start site region 62982	683 bp downstream
Tssr62983	transcription start site region 62983	1140 bp downstream
Tssr62984	transcription start site region 62984	1210 bp downstream
Tssr62985	transcription start site region 62985	1253 bp downstream
Tssr62986	transcription start site region 62986	1564 bp downstream
Tssr62987	transcription start site region 62987	1694 bp downstream
Tssr62988	transcription start site region 62988	1762 bp downstream
Tssr62989	transcription start site region 62989	1921 bp downstream
Tssr62990	transcription start site region 62990	1967 bp downstream
Tssr62991	transcription start site region 62991	1994 bp downstream