rs254705465 SNP Detail

Summary

• ID
  rs254705465
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:91013919 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACCTACAC CAAGGTAGGG
  GAAACCGAGA ACGGTGCCGC GATGCCCTCT GGGAAATGGA GTCCAGTCCT TTTGACAACT
  CAAACATTTG TCATCCTCCA CTGGCCCTAC CAGGACTTTT CTTCCAGTCC CATAGGGCCC
  AGAGCCCAAA AGGAAGTACC CGACCCTGGG TCTTTAAATC TGTACTCTTT TTCAGATGCC
  M
  ATGGAAAAAG TAAGACACTT TACACACACA CACACACACA CACACACACA CCACACACAC
  ACACACACAC ACACACACAC ACACACACAC ACACACACAC ACACGTGAAG TGTACTGCTG
  AGTTCTTGCT GAAGATCCAA CTCCTCCCCC CACAGGAAGA GCACCTGCTC CTACCTGGAT
  CATTAAAGGG AAGGAGCACC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss354809298	MGP_WTSI_2_91023731	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs254705465					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354809298	MGP_WTSI_2_91023731	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:91013919 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11898	CpG island 11898			150 bp distal
Gm74571	predicted gene, 74571			1112 bp downstream
Madd	MAP-kinase activating death domain			Intron
				Noncoding-Transcript-Variant
Nr1h3	nuclear receptor subfamily 1, group H, member 3			487 bp downstream
Rr367225	regulatory region 367225			314 bp upstream
Rr397125	regulatory region 397125			174 bp downstream
Rr560660	regulatory region 560660			1375 bp distal
Rr560661	regulatory region 560661			737 bp distal
Rr560662	regulatory region 560662			898 bp distal
Rr560663	regulatory region 560663			37 bp distal
Rr560664	regulatory region 560664			656 bp distal
Rr560665	regulatory region 560665			234 bp proximal
Tssr18868	transcription start site region 18868			1362 bp downstream
Tssr25161	transcription start site region 25161			641 bp upstream
Tssr25162	transcription start site region 25162			622 bp upstream
Tssr25163	transcription start site region 25163			514 bp upstream
Tssr25164	transcription start site region 25164			249 bp downstream
Tssr25165	transcription start site region 25165			267 bp downstream
Tssr25166	transcription start site region 25166			380 bp downstream
Tssr25167	transcription start site region 25167			403 bp downstream