rs254707625 SNP Detail

Summary

• ID
  rs254707625
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69571970 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATACAGCTAA AGACAAATCT
  AAAAACTCAT AACTTCAGCT CTTCCCAGCC AACCTCGTCC AGAAGGAACT GACTCTGCCA
  TCATTTCGTC CCTTGTCCAG GTAGAGAAGA CAAAAGAAAA TGACTGACTG GTAGGCCTTA
  GATATTTTAT TTTTAAGCTC TTTGGGTGAA ACCCAGTATT TCCAGGCTCA GCTTTAATGC
  Y
  ACTATGGATG TCCTTGGGAC AAGTCTGAAG GCTGTTTTGC TAAGAGAGAT GGCTCAGCAC
  AGGAACCCAG ACACAGGTAC CTGGGAAGAC AACTTTCACC AGGAAAACTT TGGTCCCCTG
  TGGGAAGTTC CCTTTCGCCC TGGAATGATA TGGGGGTAGG GGGGGAACAC ACACGTCTCA
  GGTATGGGGG AGGGTGGTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383788684	MGP_WTSI_11_69494646	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254707625					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383788684	MGP_WTSI_11_69494646	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69571970 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3142	CpG island 3142	123 bp proximal
Rr450067	regulatory region 450067	within coordinates
Rr450068	regulatory region 450068	692 bp proximal
Rr450069	regulatory region 450069	930 bp proximal
Rr450070	regulatory region 450070	1798 bp proximal
Senp3	SUMO/sentrin specific peptidase 3	within coordinates
Tnfsf13	tumor necrosis factor (ligand) superfamily, member 13	1702 bp downstream
Tnfsf13os	tumor necrosis factor (ligand) superfamily, member 13, opposite strand	888 bp upstream
Tnfsfm13	tumor necrosis factor (ligand) superfamily, membrane-bound member 13	1433 bp downstream
Tssr108773	transcription start site region 108773	479 bp upstream
Tssr108774	transcription start site region 108774	649 bp downstream
Tssr108775	transcription start site region 108775	678 bp downstream
Tssr108776	transcription start site region 108776	726 bp downstream
Tssr108777	transcription start site region 108777	759 bp downstream
Tssr108778	transcription start site region 108778	815 bp downstream
Tssr108779	transcription start site region 108779	850 bp downstream
Tssr108780	transcription start site region 108780	926 bp downstream