rs254708615 SNP Detail

Summary

• ID
  rs254708615
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:3280579 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTGAACTG GCCCTAGCAA
  AGTACAATTT AAATATATTG CTTCCAGACA GATAATTCTT AGTTGTGCTG TCTATGTGGT
  CTTAAATTCT TCCTGCTTCT GCAATCAGCA TCCGCTCTTA CAACTGTGTA GTGCTTTTGG
  GGCTCCTAAT CCACCCCACT CCACGATGCC TTCTGACACA GTGACTCTGT ACTCACACTG
  R
  TGGAAAAGGA AGAAAAGCCC TGGGCATGCA GTTGTGCAGG TCTCACGCGG AGCTGCTGCT
  AAGCAAAACC TCTCTGCCAC TCTCGGCTTG GCTGAGTTCC TCTCTTGGCT CAGGGTTAGT
  GATCTGGTAA GGTCTAGGAG GCTTAGGACC CAGGGGGCGC CTTTCAGCTG AAAAACACCT
  CGGCTGCAGC AAGCTAGCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382239528	MGP_WTSI_11_3230582	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254708615					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382239528	MGP_WTSI_11_3230582	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:3280579 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2477	CpG island 2477	1193 bp proximal
Gm12592	predicted gene 12592	within coordinates
Pik3ip1	phosphoinositide-3-kinase interacting protein 1	152 bp upstream
Rr402383	regulatory region 402383	1029 bp upstream
Rr402384	regulatory region 402384	1676 bp upstream
Rr441525	regulatory region 441525	1781 bp distal
Rr441527	regulatory region 441527	within coordinates
Rr441528	regulatory region 441528	589 bp proximal
Rr441529	regulatory region 441529	1240 bp proximal
Tssr3405	transcription start site region 3405	175 bp upstream
Tssr3406	transcription start site region 3406	1906 bp upstream
Tssr100039	transcription start site region 100039	38 bp downstream
Tssr100040	transcription start site region 100040	89 bp upstream
Tssr100041	transcription start site region 100041	161 bp upstream
Tssr100042	transcription start site region 100042	198 bp upstream
Tssr100043	transcription start site region 100043	202 bp upstream
Tssr100044	transcription start site region 100044	237 bp upstream
Tssr100045	transcription start site region 100045	253 bp upstream
Tssr100046	transcription start site region 100046	300 bp upstream
Tssr100047	transcription start site region 100047	337 bp upstream
Tssr100048	transcription start site region 100048	367 bp upstream
Tssr100049	transcription start site region 100049	1847 bp upstream
Tssr100050	transcription start site region 100050	1882 bp upstream
Tssr100051	transcription start site region 100051	1915 bp upstream
Tssr106459	transcription start site region 106459	601 bp downstream
Tssr106460	transcription start site region 106460	1674 bp downstream
Tssr106461	transcription start site region 106461	1698 bp downstream