rs254714312 SNP Detail

Summary

• ID
  rs254714312
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:47259805 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGCGCCGCG CGCTCGCTCT
  CTCTCGCGCT CTCTCTCTCC CCGCTCCTCA GAATCAACAA GATTTTCAAA ATGGCGGTTC
  GGGAAGCAGA GCGGGAAGGC GCCGGCCAAT CAGCGCGCGG CGCTGGGAGT TGGCGCGCGC
  GGGAGGGCGG GCGGGAGGCG GGGCGGCGGC GTCTCTCGCG GGCTGCCCGG GCGGGGTCTC
  S
  GGGGGTCTGC GGTCCGCGGG AGGACCCGGG TCGCGGCGTC CGGCGGGTGG CTGGGTGGGT
  GCACGGGGTG GCGGGCGGGC GCGAGCCGGG GCCTCCGCGC TGAACGGTTG GACGCTAGGG
  GGCCTGCGAG CTTCCAGCCT CCCGATCCCG GGAGAAAAAT GACCGGCCGT CCTGGGCCGC
  GGAGCCGGGG AGCGTCTGGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss388517799	MGP_WTSI_13_47201697	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254714312					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss388517799	MGP_WTSI_13_47201697	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:47259805 () rs orientation: forward

Symbol	Name	Function Class
1700026N04Rik	RIKEN cDNA 1700026N04 gene	17 bp upstream
Cpgi5551	CpG island 5551	within coordinates
Dek	DEK proto-oncogene	128 bp upstream
Rr479039	regulatory region 479039	within coordinates
Rr479040	regulatory region 479040	108 bp proximal
Tssr119626	transcription start site region 119626	737 bp downstream
Tssr119627	transcription start site region 119627	72 bp upstream
Tssr119628	transcription start site region 119628	84 bp upstream
Tssr122369	transcription start site region 122369	952 bp upstream
Tssr122370	transcription start site region 122370	805 bp upstream
Tssr122371	transcription start site region 122371	707 bp upstream
Tssr122372	transcription start site region 122372	627 bp upstream
Tssr122373	transcription start site region 122373	582 bp upstream
Tssr122374	transcription start site region 122374	454 bp upstream
Tssr122375	transcription start site region 122375	219 bp upstream
Tssr122376	transcription start site region 122376	201 bp upstream
Tssr122377	transcription start site region 122377	158 bp upstream
Tssr122378	transcription start site region 122378	123 bp upstream
Tssr122379	transcription start site region 122379	108 bp upstream
Tssr122380	transcription start site region 122380	96 bp upstream