rs254714834 SNP Detail

Summary

• ID
  rs254714834
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:144992628 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATAAC TCCGCTGGGA AGCAGAGACC
  R
  TGCCCATACA TAAACCAAAC AATGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322067429	CHEV_6_144995422	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254714834					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:144992628 () rs orientation: forward

Symbol	Name	Function Class
Bcat1	branched chain aminotransferase 1, cytosolic	within coordinates
Cpgi18152	CpG island 18152	1211 bp proximal
Gm15687	predicted gene 15687	635 bp upstream
Gm26666	predicted gene, 26666	657 bp upstream
Rr145931	regulatory region 145931	1227 bp distal
Rr145932	regulatory region 145932	within coordinates
Tssr59519	transcription start site region 59519	1636 bp upstream
Tssr64030	transcription start site region 64030	603 bp downstream
Tssr64031	transcription start site region 64031	628 bp downstream
Tssr64032	transcription start site region 64032	703 bp downstream
Tssr64033	transcription start site region 64033	734 bp downstream
Tssr64034	transcription start site region 64034	762 bp downstream
Tssr64035	transcription start site region 64035	823 bp downstream
Tssr64036	transcription start site region 64036	1683 bp downstream
Tssr64037	transcription start site region 64037	1699 bp downstream
Tssr64038	transcription start site region 64038	1754 bp downstream
Tssr64039	transcription start site region 64039	1774 bp downstream
Tssr64040	transcription start site region 64040	1793 bp downstream
Tssr64041	transcription start site region 64041	1808 bp downstream
Tssr64042	transcription start site region 64042	1828 bp downstream
Tssr64043	transcription start site region 64043	1847 bp downstream
Tssr64044	transcription start site region 64044	1907 bp downstream
Tssr64045	transcription start site region 64045	1937 bp downstream