rs254717229 SNP Detail

Summary

• ID
  rs254717229
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:90918579 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    aatagagtt gataagagaa agaaaaggac
  ttaaaaatgt tttaaagact gtGTGTCACA ATGAGTCACA TATAATCGTT AGGCTATTAG
  CAGAGCTGCT AGCTCTCCTC ATATTGCAGA AAGGGAGGAA ACCTGACATT TAAGAAATCA
  Y
  GAGACTTGCC TTCggttaga agtatagctc agtggtagaa tacttgccca gtatgtggga
  ggccctgggt tcaattccca acagagctca aagaaaCCTG CCTTAGAAAA TAAATGATCA
  GATTGCACAT TGGAAACCTT GCTCGTTAAC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321608295	CHEV_5_91199746	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254717229					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:90918579 () rs orientation: forward

Symbol	Name	Function Class
Pf4	platelet factor 4	1783 bp upstream
Ppbp	pro-platelet basic protein	657 bp downstream
Rr125443	regulatory region 125443	1221 bp proximal
Tssr47183	transcription start site region 47183	1256 bp downstream
Tssr47184	transcription start site region 47184	1114 bp downstream
Tssr47185	transcription start site region 47185	1016 bp downstream
Tssr47186	transcription start site region 47186	861 bp downstream
Tssr47187	transcription start site region 47187	905 bp upstream
Tssr47188	transcription start site region 47188	1340 bp upstream
Tssr47189	transcription start site region 47189	1749 bp upstream
Tssr47190	transcription start site region 47190	1773 bp upstream
Tssr47191	transcription start site region 47191	1817 bp upstream
Tssr51801	transcription start site region 51801	658 bp upstream