rs254717629 SNP Detail

Summary

• ID
  rs254717629
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:107851106 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACAACCGT CTGTAACTCC
  AGTTCCAGAG GATTCTACAC CCTTTTCTGG CTTCCACAGG CACCAGGTAT ATGTGGCACA
  TATACACACA GGCAAAACAA CCATACGTGC AACATTAAAA ACAGATCAAA GCCAGGTGTG
  GTGGCGCACG TCTTTAATCC CAGCACTTGG GAGGCAGAGG CAGGCGGATT TCTGAGTTCG
  R
  GGCCAGCCTG GTCTACAAAG TGAGTTCTAG GACAGCCAGG CCTATACAGA GAAACCCTGT
  CTCTGTAAAA AACAAAAAAA ACAAAAAACA AAAAAAAAAA AAAACAAAAA CAAAAAAAAG
  ATCAAAACAA CTATGGGGCC AGTGAGACAG TGCAGCAGTT ACTCATTGCC AAGTCTGGTG
  GCCTGTGTTC AGTCCCAAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378858133	MGP_WTSI_9_107876238	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254717629					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378858133	MGP_WTSI_9_107876238	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:107851106 () rs orientation: forward

Symbol	Name	Function Class
Rr368862	regulatory region 368862	1825 bp upstream
Rr401669	regulatory region 401669	1494 bp upstream
Rr686670	regulatory region 686670	1050 bp distal
Rr686671	regulatory region 686671	1506 bp distal
Rr686672	regulatory region 686672	1137 bp proximal
Traip	TRAF-interacting protein	1637 bp downstream
Tssr87038	transcription start site region 87038	1793 bp downstream
Tssr87039	transcription start site region 87039	1589 bp upstream
Tssr87040	transcription start site region 87040	1622 bp upstream
Tssr87041	transcription start site region 87041	1703 bp upstream
Tssr87042	transcription start site region 87042	1715 bp upstream
Tssr87043	transcription start site region 87043	1736 bp upstream
Tssr87044	transcription start site region 87044	1745 bp upstream
Uba7	ubiquitin-like modifier activating enzyme 7	1660 bp upstream