rs254718909 SNP Detail

Summary

• ID
  rs254718909
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:103591807 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTTCGACG CTTAGTGATG
  ACGTAAGAAC ACGCCGCGGA TCTCCGCTAC GCTTGCGCAC TAACTCCCGG CCGCCATTTC
  GCCATTTGCT GCGGGTAACC TGGCTATGAC AGGCGGAAGT AATCGTTTAG ATATCCGGGT
  GTCTCGCATT TGCCGTTGCC ACTGGTACAG GAACTCGTCC ACTGTTGCTA TGTTGAAAAA
  M
  ACCTCTATAG CAGGGTTGTA CAAGGCAATA GCTGTTGCTA GCGTAGGTGT TGTTTTATCG
  ACCTCCCTAC TTTTATATGA AACTAGCCCA GTAATTGTTT AATTCATCTT ACTTGAACCT
  CCATCCGGCA GCAGTCTGAG AATGTCTGTA GACTTTGTAC CAACGATCGT GGCCGCGGTA
  CTCTGCAGGC TTTTCTTACT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355099525	MGP_WTSI_2_103601619	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254718909					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355099525	MGP_WTSI_2_103601619	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:103591807 () rs orientation: forward

Symbol	Name	Function Class
Caprin1	cell cycle associated protein 1	1485 bp downstream
Cpgi11984	CpG island 11984	within coordinates
Gm75186	predicted gene, 75186	within coordinates
Nat10	N-acetyltransferase 10	192 bp upstream
Rr55318	regulatory region 55318	within coordinates
Rr367263	regulatory region 367263	within coordinates
Tssr19170	transcription start site region 19170	36 bp downstream
Tssr19171	transcription start site region 19171	15 bp upstream
Tssr25490	transcription start site region 25490	521 bp upstream
Tssr25491	transcription start site region 25491	372 bp upstream
Tssr25492	transcription start site region 25492	290 bp upstream
Tssr25493	transcription start site region 25493	176 bp upstream