rs254722452 SNP Detail

Summary

• ID
  rs254722452
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156079856 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTTGTGTG TGGATCTTGT
  TTGGAGATAG GATCTTACTG TTTATCCATG GCTGGCTTGG AGCTCACAGT GTGGACCAGA
  CTGGCCTTGA ACTCAGAGAT CCACCCATGT CCACCTCCTG TGTGCTGGGA TTAAAGTTGA
  ATGTCACCAT ATCCTGCTGG AATATATGGT TGGTCCTGAT TATTAAATCA TGTTATGAAA
  K
  AAATATATTT AGTGAAGCAT TTGCTTCCAC TTAACTGTGG TGGTCTGTCT TTTTTTTTTT
  TTTTTTTTTT TTTCTCTCCC TGAGACAATA CTTCTCTGTG TAGCCCTGGT TATCACCCAA
  GTGCTGGGAT TAAAGGTTGA TAGTGAGAAT TTGGAATTTT GGTTGCTTTA AAAATCACAA
  ATATTATAAG GGTGTGCTTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321444411	CHEV_4_155369508	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254722452					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156079856 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15496	CpG island 15496	1562 bp distal
Rr100725	regulatory region 100725	855 bp distal
Rr377473	regulatory region 377473	1026 bp downstream
Sdf4	stromal cell derived factor 4	within coordinates
Tssr40752	transcription start site region 40752	1944 bp downstream
Tssr40753	transcription start site region 40753	940 bp upstream