rs254726200 SNP Detail

Summary

• ID
  rs254726200
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:31149095 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGCGGGGTA CGCGCGAGGG
  GGGCGGGGGA GCGGGAGCAC GCGCGTGCGC GGCCGAGGCG CCAGGCGCGC GCCCCGGTCG
  GGGCTGGGGA CGCGCGCGCA GCCTGCAGTG TGCAGCCCGC CGGGAGCCAC AATAGGCCAG
  ACGGCGCGCG CGCCCGAGGG GCTGGCTGGC GCGGGGCCGC GCGGCGCCGC TGGCTTCGTT
  Y
  CCTCCCCTCC CCCGCCCGCC GCCCTCGCTG TCCCCCGGGC GGCCGGAGAC GGCGGCGGCG
  TCTGCGGGAA GCCGTGTCTC CGCAGTGACG TGGGCGGGCC GCGGGCCGGG TGACGTCAGA
  GGCTGTGTGT AGCGATGTGT GTGGGGTTCG GAGCGGCGCC GGCACAGCGA AGGCGGCTGG
  CGAGCGACGG CGACGGCGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357433262	MGP_WTSI_3_30993868	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254726200					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357433262	MGP_WTSI_3_30993868	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:31149095 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13048	CpG island 13048	within coordinates
Gm65753	predicted gene, 65753	within coordinates
Gm65762	predicted gene, 65762	945 bp downstream
Rr397631	regulatory region 397631	1129 bp downstream
Rr574879	regulatory region 574879	1039 bp distal
Rr574880	regulatory region 574880	648 bp distal
Rr574881	regulatory region 574881	within coordinates
Rr574882	regulatory region 574882	190 bp proximal
Rr574883	regulatory region 574883	221 bp proximal
Rr574884	regulatory region 574884	885 bp proximal
Skil	SKI-like	164 bp upstream
Tssr28706	transcription start site region 28706	1039 bp downstream
Tssr28707	transcription start site region 28707	896 bp downstream
Tssr28708	transcription start site region 28708	258 bp downstream
Tssr28709	transcription start site region 28709	234 bp downstream
Tssr28710	transcription start site region 28710	217 bp downstream
Tssr28711	transcription start site region 28711	within coordinates
Tssr28712	transcription start site region 28712	15 bp upstream
Tssr28713	transcription start site region 28713	106 bp upstream
Tssr28714	transcription start site region 28714	951 bp upstream
Tssr28715	transcription start site region 28715	1428 bp upstream
Tssr28716	transcription start site region 28716	1894 bp upstream
Tssr32911	transcription start site region 32911	881 bp downstream