rs254727824 SNP Detail

Summary

• ID
  rs254727824
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:115152632 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCAATTTAC ACACTGCATG
  CTTTTTAAGG AGAAGCAATT CAGAATGTTT TACAAAGATA CATGGGAAGC TAGCTGAGTT
  AGCGTCCTAG AAGAGCTTCC TGGAGAAAGC TGCCTTTTGT TAGGAGTATC TTCGGCAAAA
  AGGAGAGCCG TGAAGTAGAA AGGAGCATCC GACATTGACG TGTGACAAGA AGTCAGACAA
  R
  AAATCAGAGA CATTACCTTT AAGTTCAAGG CCAGCCTCTT TTGAATTGTG AGCTCTAAGC
  TAATTGGAGC TACATAGCAA GACACCATTT CAGTAATAAT AATAATGATA ATATTTACAA
  TAATAATGCA AATAGGAAAA GAATTTGTGA TGTAACTTGC AAGGTATCAA TTCAAAAACA
  GTCTTTAACC TGGTACAGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323484111	CHEV_10_114753783	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254727824					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:115152632 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2204	CpG island 2204	614 bp distal
Gm10752	predicted gene 10752	within coordinates
Gm67120	predicted gene, 67120	within coordinates
Rab21	RAB21, member RAS oncogene family	1092 bp upstream
Rr402237	regulatory region 402237	962 bp downstream
Rr402238	regulatory region 402238	266 bp downstream
Rr439193	regulatory region 439193	1138 bp distal
Rr439194	regulatory region 439194	1088 bp distal
Rr439195	regulatory region 439195	27 bp distal
Rr439196	regulatory region 439196	900 bp distal
Rr439197	regulatory region 439197	803 bp proximal
Rr439198	regulatory region 439198	944 bp proximal
Tssr95806	transcription start site region 95806	1673 bp downstream
Tssr95807	transcription start site region 95807	1633 bp downstream
Tssr95808	transcription start site region 95808	1057 bp downstream
Tssr95809	transcription start site region 95809	1033 bp downstream
Tssr99318	transcription start site region 99318	1840 bp upstream
Tssr99319	transcription start site region 99319	1797 bp upstream
Tssr99320	transcription start site region 99320	1205 bp upstream
Tssr99321	transcription start site region 99321	1112 bp upstream
Tssr99322	transcription start site region 99322	1103 bp upstream