rs254730552 SNP Detail

Summary

• ID
  rs254730552
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:53748199 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGGGGGAAT CTCGCGAGGG
  TTGGAGTTTT GGCGAGAGTT TGTGGAAGAT GGCGCCTGTT GTGACAGGGT AAGTCTGAGG
  GGGCAGCGAG TGCTGGGAAC CGGGAAAGTT GCGGGCGTCT GACCGCCGGC GGCAGGCGGC
  GGGCCGGGGC CGCGCGGCGC GCCGGGGCCT CGGGAGGCGG CGCGGGGCGG CGACGCGATG
  K
  CGCGGGCCGG TGCGGGGCTC GCCCGTGCGC CGCGGTGGAG CGGGCTCCGG GCGCGTGAGG
  GCGGGCGGTG GCGAGGCCGG CGGCTGCGGG CGGAGTGCGG CCGGCGCGCG GGGCCGTAGG
  CACCGTGCCC GGCGCGCGCC CCCCTCGGCG GGCCTGGCGG GGATCCCGGC GCAGCTTTGT
  TCCCCGTGCG TGGCCCGCGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ
ss364963859	MGP_WTSI_5_53982096	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ
rs254730552					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss364963859	MGP_WTSI_5_53982096	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:53748199 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15869	CpG island 15869	within coordinates
Rbpj	recombination signal binding protein for immunoglobulin kappa J region	within coordinates
Rr367840	regulatory region 367840	1771 bp downstream
Rr611645	regulatory region 611645	1487 bp distal
Rr611646	regulatory region 611646	376 bp distal
Rr611647	regulatory region 611647	within coordinates
Rr611648	regulatory region 611648	135 bp proximal
Rr611649	regulatory region 611649	633 bp proximal
Rr611650	regulatory region 611650	1051 bp proximal
Tssr46225	transcription start site region 46225	1892 bp downstream
Tssr46226	transcription start site region 46226	1413 bp downstream
Tssr46227	transcription start site region 46227	506 bp downstream
Tssr46228	transcription start site region 46228	480 bp downstream
Tssr46229	transcription start site region 46229	424 bp downstream
Tssr46230	transcription start site region 46230	328 bp downstream
Tssr46231	transcription start site region 46231	189 bp downstream
Tssr46232	transcription start site region 46232	154 bp downstream
Tssr46233	transcription start site region 46233	135 bp downstream
Tssr46234	transcription start site region 46234	202 bp upstream
Tssr46235	transcription start site region 46235	376 bp upstream
Tssr46236	transcription start site region 46236	391 bp upstream
Tssr46237	transcription start site region 46237	543 bp upstream
Tssr46238	transcription start site region 46238	609 bp upstream
Tssr46239	transcription start site region 46239	672 bp upstream
Tssr46240	transcription start site region 46240	739 bp upstream
Tssr46241	transcription start site region 46241	1060 bp upstream
Tssr51023	transcription start site region 51023	1592 bp upstream
Tssr51024	transcription start site region 51024	665 bp upstream
Tssr51025	transcription start site region 51025	268 bp upstream