rs254732887 SNP Detail

Summary

• ID
  rs254732887
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:130552693 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTAGCCTG GTGAGGCCAG
  GACGATTTAA GAGAACTCAG TTCCAAGGGT GAACTGAATT CTTCCTAGTG CAATGTGGGT
  GCGGGGTTCC CACCCTGCCC CAGAAACAGT GCGGTACATA CAGAGCCTGT CCAAAGGAGT
  CCAGAGACAC CTCAGTGCTC CTGGGAAGGT ATTCAGGACA CCGGCTTGCC TGGAGACACA
  R
  TGCATTCTGA ATCAGAGGTG GTGATGTGTC CTGGACTTCT CTGGGCCCTG GTTTCCCTAG
  AGAGTAAGAC ATGCTGGGGC CAGAGCACTG AAGAGCTAAG CTTCATCTCT CTTGGGGGCC
  AGACTAGGGA CTCTATGTGT AAGGTTGATT CTCCTTGATT GCCAGAGGCA TGTGGGTGAC
  AGCCAGGACT GGCTGAGCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321318875	CHEV_4_130381297	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254732887					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:130552693 () rs orientation: forward

Symbol	Name	Function Class
Gm26716	predicted gene, 26716	within coordinates
Sdc3	syndecan 3	within coordinates
Tssr39285	transcription start site region 39285	1983 bp downstream
Tssr39286	transcription start site region 39286	1916 bp downstream
Tssr39287	transcription start site region 39287	1902 bp downstream
Tssr39288	transcription start site region 39288	1858 bp downstream
Tssr39289	transcription start site region 39289	1737 bp downstream
Tssr39290	transcription start site region 39290	1730 bp downstream
Tssr39291	transcription start site region 39291	1584 bp downstream
Tssr39292	transcription start site region 39292	1501 bp downstream
Tssr39293	transcription start site region 39293	484 bp upstream
Tssr39294	transcription start site region 39294	639 bp upstream
Tssr39295	transcription start site region 39295	805 bp upstream
Tssr39296	transcription start site region 39296	831 bp upstream