rs254740493 SNP Detail

Summary

• ID
  rs254740493
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:47413883 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGACCTTGC CCATCCCTCA
  GTCCCCCCAA ACTTTATGAG CCTTCAGTCA CCCTAAGTAA AGTTGATCTG CCTACTGAGT
  GCGGGTCCAG TGTGGCTTAT TCACTCAGGG CTTCTGAACC CCAACCCCTT TCATAACCTC
  TACTCCCTCT GCCCTCATGG ACTGTATGGG CAGCGGTCCA CTAGAGCAGG GCTCCCTCTG
  Y
  CCTCATGGAC TGTATGGGCA GCGGTCCACT AGAGCAGGGC TCCCTCTGCT CTCATGGACT
  GTATGGGCAG CGGTCCACTA GAGCAGGGCT CCCTCTGCCC TCATGGACTG TATGGGCAGC
  GGTCCACTAG AGCAGGGAGA CCCTTTTCTA CCTCACACTC ACACCAGTGC ATTACACTAA
  CCTTGTTCAC TGGATTGTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	KK/HlJ	LP/J	NON/ShiLtJ	PL/J	PWK/PhJ
ss391003515	MGP_WTSI_14_47796101	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	C	C	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	KK/HlJ	LP/J	NON/ShiLtJ	PL/J	PWK/PhJ
rs254740493					SNP	T	T	T	T	T	T	T	T	T	C	C	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391003515	MGP_WTSI_14_47796101	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:47413883 () rs orientation: forward

Symbol	Name	Function Class
Gch1	GTP cyclohydrolase 1	within coordinates
Gm18811	predicted gene, 18811	1457 bp downstream
Rr491339	regulatory region 491339	1383 bp proximal
Tssr128307	transcription start site region 128307	762 bp upstream
Tssr128308	transcription start site region 128308	878 bp downstream
Tssr128309	transcription start site region 128309	1412 bp downstream
Tssr128310	transcription start site region 128310	1449 bp downstream