rs254743721 SNP Detail

Summary

• ID
  rs254743721
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:134273974 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGGGGTTG CCCAGGACTG
  TTGAAAGAAC AGCTAGAAGA GTGGCAGGGG CAAGCAGAAA GCCAGATAGT CGGGGTGCAG
  TTGAGGAAGG AGGGCCCTGC AGAGGACTCC CGGGTAGTGG AGAAACTTGC CCCCTGTGCT
  TTACCCTTGT AGCATAGTAA TGGGAGCTGC TGGGTTTGAA CCCTGGCAAC AGTGGGTTCA
  Y
  ATTCATCCCT GTTCTGCTGC AACTGCCACG GTGCCTTGGG ATTATTGGGG AGGGGAGTCT
  ATTTCTTTGA TTTTTTTTTG TTTATTTTTT TGGGGGGGGG ACAGAGTTTC ACTATGTAGC
  CCTGGTTGGT CTGGCTTCAT ACAGAGGTCT ACTTGTCTCT ATCACCTGAT TGCTAGGTTT
  AAAGGCATGC ATCCTCACAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322457607	CHEV_7_141863928	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254743721					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:134273974 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi19845	CpG island 19845			568 bp distal
Dock1	dedicator of cytokinesis 1			Intron
				Noncoding-Transcript-Variant
Rr656984	regulatory region 656984			1548 bp distal
Rr656985	regulatory region 656985			99 bp distal
Rr656986	regulatory region 656986			1734 bp proximal
Tssr69616	transcription start site region 69616			1584 bp downstream
Tssr69617	transcription start site region 69617			1530 bp downstream