rs254753690 SNP Detail

Summary

• ID
  rs254753690
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:5913356 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCATTTCTT TGGAACATCA
  ATAATAGGTA TCGCCGCTTC GATTCCTAAT ACTGTACACA CTGTAACAGA CATCGAATTT
  TGGGGGGAAA TGGAAAACAG GCACCCCCTC TTCCTTAGCT TGCTTGTGCT TGCTGTGTGA
  GGCCGGGACT TAGGATGTGT ATACTGTGAT AGAAGGCACA TTGTTTAGTA AGCTTTAGCC
  Y
  TTTTGCTGGT AGCCTGTGCT CAAGATGGTC TGTACCCTGA TAACATTTTT TTGTTGCAGT
  TTAGTGCCGA AATTTCTGTC TGTAGAATAG AATACACAGA GGCACAGACG GCCTTATATG
  GGCATGCAGG CAAAGCTAGT GAAAAATCAG GGCCTACATA ATTGAATCCT AAAATCTTTC
  CTACCGTTTT TCTTTTCCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss387605999	MGP_WTSI_13_5862603	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254753690					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387605999	MGP_WTSI_13_5862603	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:5913356 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5253	CpG island 5253	1421 bp distal
Klf6	Kruppel-like transcription factor 6	within coordinates
Rr387905	regulatory region 387905	786 bp downstream
Rr403559	regulatory region 403559	1183 bp upstream
Rr474542	regulatory region 474542	1865 bp distal
Rr474543	regulatory region 474543	1716 bp distal
Tssr118237	transcription start site region 118237	1856 bp downstream
Tssr118238	transcription start site region 118238	1831 bp downstream
Tssr118239	transcription start site region 118239	1807 bp downstream
Tssr118240	transcription start site region 118240	1793 bp downstream
Tssr118241	transcription start site region 118241	1720 bp downstream
Tssr118242	transcription start site region 118242	1684 bp downstream
Tssr118243	transcription start site region 118243	1482 bp downstream
Tssr118244	transcription start site region 118244	736 bp downstream
Tssr118245	transcription start site region 118245	485 bp downstream
Tssr118246	transcription start site region 118246	458 bp upstream
Tssr118247	transcription start site region 118247	524 bp upstream
Tssr118248	transcription start site region 118248	1129 bp upstream
Tssr118249	transcription start site region 118249	1334 bp upstream
Tssr118250	transcription start site region 118250	1393 bp upstream
Tssr118251	transcription start site region 118251	1413 bp upstream
Tssr118252	transcription start site region 118252	1493 bp upstream
Tssr121319	transcription start site region 121319	948 bp downstream
Tssr121320	transcription start site region 121320	972 bp downstream
Tssr121321	transcription start site region 121321	995 bp downstream
Tssr121322	transcription start site region 121322	1016 bp downstream