rs254770425 SNP Detail

Summary

• ID
  rs254770425
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:37399384 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGTT GTCTTCAGTC ATTGGGCGGG
  Y
  TTGGCAGCAA ATACCTGTAC TGGTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322907198	CHEV_9_37295673	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254770425					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:37399384 () rs orientation: forward

Symbol	Name	Function Class
BB236558	expressed sequence BB236558	619 bp downstream
Cpgi21578	CpG island 21578	726 bp proximal
Gm69832	predicted gene, 69832	275 bp downstream
Msantd2	Myb/SANT-like DNA-binding domain containing 2	933 bp upstream
Rr676695	regulatory region 676695	443 bp proximal
Rr676696	regulatory region 676696	1160 bp proximal
Rr676697	regulatory region 676697	1519 bp proximal
Tssr2827	transcription start site region 2827	974 bp upstream
Tssr84392	transcription start site region 84392	682 bp upstream
Tssr84393	transcription start site region 84393	900 bp upstream
Tssr84394	transcription start site region 84394	935 bp upstream
Tssr84395	transcription start site region 84395	1193 bp upstream
Tssr88840	transcription start site region 88840	1741 bp downstream