rs254784598 SNP Detail

Summary

• ID
  rs254784598
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:7631501 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCAGTTGGT GTTACAATGG
  AGTGTTGGGC TGATGGGTAC CTCTGTTGTG TGCATGTGTA CGGACATGGG TTCACTTTCA
  GCTATGGGCA AAACAGTAGG GGGTGTGGGG GCTGGGAGAA CTCTGAATGC AAAGCAGCCG
  GGAATCCTTA TTCAAAGTGA ATTGTTATTC TCAAAGTCCT CTTGTGTCGC CCCCCCCCCC
  M
  ATCCCTGGTT GTTGTGATGG TTCAAGCGAG GGAGTTGGGG TCCCGGCCTT TCTATTGTTC
  CGACCCTTCA AGGGCCTGTG GGTAGGAAGC AGTATAGGGT AGGGGGAGGC AAAAGATTTG
  GGACTTGGTC TAGGCAGTGC CCTTCTGGAT ATGAGCCCGC TTCGCTTCAG TGTCTGGGGA
  AGGGAGGGTA TTTAGAGCTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss403006290	MGP_WTSI_X_7342388	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	A	C	C	C	C	A	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs254784598					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	A	C	C	C	C	A	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss403006290	MGP_WTSI_X_7342388	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:7631501 () rs orientation: forward

Symbol	Name	Function Class
Rr394688	regulatory region 394688	within coordinates
Rr689656	regulatory region 689656	1165 bp distal
Rr689657	regulatory region 689657	854 bp distal
Tfe3	transcription factor E3	within coordinates
Tssr160430	transcription start site region 160430	1297 bp downstream
Tssr160431	transcription start site region 160431	999 bp downstream
Tssr160432	transcription start site region 160432	975 bp downstream
Tssr160433	transcription start site region 160433	941 bp downstream
Tssr160434	transcription start site region 160434	911 bp downstream
Tssr160435	transcription start site region 160435	847 bp downstream
Tssr162815	transcription start site region 162815	1474 bp upstream
Tssr162816	transcription start site region 162816	535 bp downstream